Peptides 101

What a certificate of analysis shows

PaperworkPublished 19 October 2026Updated 25 October 20264 min read

A certificate of analysis (COA) is the document that ties one lot of material to the results of the tests run on it. For a research peptide it should name the compound, the lot, the date and the laboratory, and give each test with its method, its specification and its result.

A peptide COA is a record of what was measured, by which method, on which sample.

What belongs on a peptide certificate of analysis

A complete peptide COA has a line for each field below, each with a unit, a method and, where one applies, a limit.

Fields of a peptide COA and what to check on each.
FieldWhat it should stateWhat to check
Compound and lotCompound name and lot numberThe lot number matches the lot field on the vial
IdentityMass spectrometry: observed mass, theoretical mass, ionization method (for example ESI or MALDI)Masses agree within a stated tolerance; spectrum attached
PurityReverse-phase HPLC: wavelength, column and area-percent resultChromatogram attached; method stated beside the figure
Net peptide contentMass fraction of the powder that is peptide, with the method namedNot confused with the HPLC purity figure
WaterKarl Fischer titration, as % w/wUnit and method present
Counter-ionCounter-ion identity and content as % w/w (for example trifluoroacetate, acetate or chloride), with the method named, such as ion chromatography or 19F NMRThe salt form is named; trifluoroacetate can remain from cleavage and purification
AppearancePhysical description of the powderMatches the vial contents
Date, laboratory, signatureTest date, laboratory name, named signatoryThe laboratory can be identified

Longer treatments: Confirming identity by mass spectrometry, What HPLC purity measures and, for the gap between purity and peptide content, Purity versus net peptide content.

What makes a COA checkable

Checkable means each statement can be tested against something other than the COA itself. Reading a COA comes down to five properties:

  • The lot number on the COA matches the vial.
  • Methods are stated, not implied: column, wavelength, ionization method.
  • The chromatogram and the mass spectrum are attached, not only summarised as numbers.
  • The laboratory can be identified by name.
  • Results carry units and sit next to their specification limits.

ICH Q6A defines a specification as a list of tests, references to analytical procedures and acceptance criteria, which are numerical limits, ranges or other criteria. It addresses marketing approval of new chemical drug substances and products, so it is cited for the definition only. A result with no limit beside it has no stated criterion to meet.

In-house and third-party testing

Two questions apply to any result: who ran the test, and whether that party is independent of the seller. In-house and independent results differ in what an outside reader can verify. The phrase third-party tested peptides carries information only when the laboratory is named and its report attached.

ISO/IEC 17025 is the international standard for the competence of testing and calibration laboratories, and accreditation bodies use it as the criteria for assessing laboratories. Accreditation, where claimed, is an independent evaluation of the laboratory for specific activities, separate from any one result. A third-party result is still a result for the sample sent, not for every vial.

Where Solara's documentation stands

What this does not establish

  • A COA describes the sample tested: a COA for a different lot says nothing about this vial.
  • Tests not listed were not run. Water and counter-ion content, for example, are not established by a purity result.
  • A result holds at the test date; it does not record how the vial has been stored since.
  • ISO/IEC 17025 is described as a standard, not as a statement that any laboratory named on a COA is accredited for the tests it reports.

Questions

What is a certificate of analysis for a peptide?
A report that ties one lot of a peptide to the results of the tests run on it, naming the compound, lot, test date and laboratory and listing each test with its method, specification and result.
What should a peptide COA include?
Compound and lot, identity by mass spectrometry, purity by reverse-phase HPLC with the chromatogram, and the date, laboratory and signature. Net peptide content states how much of the powder is peptide; water and counter-ion content account for much of the rest.
Does a third-party COA cover every vial in a lot?
No. It reports on the sample the laboratory received. Unless the report states how many vials were sampled and how, its result cannot be assumed to represent the whole lot.

References

  1. Specifications: Test Procedures and Acceptance Criteria for New Drug Substances and New Drug Products: Chemical Substances (ICH Q6A). International Council for Harmonisation, 1999.
  2. About ILAC. International Laboratory Accreditation Cooperation, 2026.
  3. Roux S et al. Elimination and exchange of trifluoroacetate counter-ion from cationic peptides: a critical evaluation of different approaches. J Pept Sci, 2008.

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